This page shows all areas highlighted by the pattern (SSPAK) and adjacent ends. The calculation of the total weight of amino acids consumed by the template is also shown.
(maximum length of adjacent ends 40 residues)
For example, sequences 1hynQ, 1hynR, 1hynP, 1hynS AND 4ky9P, 4ky9A form one cluster (Id≥75%).
The first four sequences completely coincide with each other, although the unstructed residues differ.
The same can be said of the last two.
Below we calculated the the unstructed (U) and structed (S) residues highlighted by SSPAK.
* 142: ktyipkndeqnwvvvdasgvplgrlatliasrirgkhrpdftpnmiqgdfvvvinaaqvaltgkklddkvytrytgyqgglktetarealskhperviehavfgmlpkgrqgramhtrlkvyagethphsaqkpqvlktqpl
* 1 5dm6G: ----------------------------------------------------------------------------------------------------------------------------------------------
residue U = 0 S = 0
* 174: MAFPDTDVSPPRGGPSSPAKspllrsfkvktyipkndeqnwvvvdasgvplgrlatliasrirgkhrpdftpnmiqgdfvvvinaaqvaltgkklddkvytrytgyqgglktetarealskhperviehavfgmlpkgrqgramhtrlkvyagethphsaqkpqvlktqplevk
* 1 2zjrG: UUUUUUUUUUUUUUUUUUUUuuuuuuuuu----------------------------------------------------------------------------------------------------------------------------------------------uuu
residue U = 20 S = 0
cluster(Id≥75%) average U = 10 S = 0
* 851: gafgweqdrgapfsgrspriltrmtdaprptagadaparppaaplvapnfiteiierdleagkyprvvtrfppdpsgyahlghvfaslldfntarqyggqfnlrmddtnpelarqeyvdsiaddlkwlgldwgehfyyasdyfdryyayaeqlirqgdayvesvspeelsrlrgnattpgtpspyrdrsveenldllrrmkagefadgehvlrakidltapnmklrdpvlyrivnkphfrtsdewhiypaydfehplqdaiegvthsmcslefvdnraiydwlmeklnfdprphqyefgrrgleytitskrklrelvqagrvsgwddprmptlraqrrlgvtpeavrafaaqigvsrtnrtvdiavyenavrddlnhraprvmavldpvkvtltnldgektlslpywphdvvrdspdglvgmpgggrvapeeavrdvpltrelyierddfspappkgfkrltpggtvrlrgagiiraddfgtdeagqvthiratllgedakaagvihwvsaeralpaefrlydrlfrvphpegenadveddsagpaeheaepgagqetapvsqgfmryltpdslrvlrgyvepsvagdpadtryqferqgyfwrdpvelervdsredalvfgriitlkdtwgkqgggtqqkaegkkrpstkgrgpdevrgegsSSPAKahapkaqpltpeqdaeftrllglgasegdartiardpallafvggaapgdtfaqvaswtvnelvaglragevkvraadlaplaegvasgqlsariarealaraaasgdapltiiereglnaglsaealqqvvaqviaanpdkaeayrggktallgfftgqvmratagkadpqalaaalkdala
* 1 2hz7A: uuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuu--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------uuuuuuuuuuuuuuuuuuuuuuuuuuuu-------------------------------------------------uuuuuu-------------uuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuUUUUUuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuu
residue U = 5 S = 0
cluster(Id≥75%) average U = 5 S = 0
* 379: meelqddyedmmeenleqeeyedpdipesqmeepaahdteatatdyhttshpgthkvyvelqelvmdeknqelrwmeaarwvqleenlgengawgrphlshltfwsllelrrvftkgtvlldlqetslagvanqlldrfifedqirpqdreellralllkhshagelealggvkpavltrsgdpsqpllpqhssletqlfceqgdggteghspsgilekippdseatlvlvgradfleqpvlgfvrlqeaaeleavelpvpirflfvllgpeaphidytqlgraaatlmservfridaymaqsrgellhslegfldcslvlpptdapseqallslvpvqrellrrryqSSPAKPDSSFYKGLDLNGGPDDPLQQTGQLF
* 1 1hynQ: uuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuu--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUUUUUUUUUUUUUUUUUUUUU
* 2 1hynR: uuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuu------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUUUUUUUUUUUUUUUUUUUUUU
* 3 1hynP: uuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuu-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU
* 4 1hynS: uuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuu-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU
residue 1hynQ U = 23 S = 8
1hynR U = 24 S = 7
1hynP U = 31 S = 0
1hynS U = 31 S = 0
average U = 27.3 S = 3.7
* 306: hpgthkvyvelqelvmdeknqelrwmeaarwvqleenlgengawgrphlshltfwsllelrrvftkgtvlldlqetslagvanqlldrfifedqirpqdreellralllkhshagelealggvkpavltrsgdpsqpllpqhssletqlfceqgdggteghspsgilekippdseatlvlvgradfleqpvlgfvrlqeaaeleavelpvpirflfvllgpeaphidytqlgraaatlmservfridaymaqsrgellhslegfldcslvlpptdapseqallslvpvqrellrrryqSSPAKPDS
* 1 4ky9P: uuuuu------------------------------------------------------------------------------------------------------------------------------------uu-------------uuuuuuuuuuuuuuuu----------------------------------------------------------------------------------------------------------------------------------UUUUUUUU
* 2 4ky9A: uuuuuu----------------------------------------------------------------------------------------------------------------------------uuu-------------------uuuuuuuuuuuuuuu-------------------------------------------------------------------------------------------------------------------------------------UUUUUU
residue 4ky9P U = 8 S = 0
4ky9A U = 6 S = 2
average U = 7.0 S = 1.0
cluster(Id≥75%) average U = 17.1 S = 2.4
* 152: GSHMSSSPAKdppiqrlrgavtrcedgqlfissykneyqtmevqnnsvvikcdglyiiylkgsffqevkidlhfredhnpisipmlndgrrivftvvaslafkdkvyltvnapdtlcehlqindgelivvqltpgycapegsyhstvnqvpl
* 1 2heyF: UUUUUUUUUU---------------------------------------------------------------------------------------------------------------------------------------uuuuuuu
* 2 2heyG: UUUUUUUUUU--------------------------------------------------------------------------------------------------------------------------------------uuuuuuuu
* 3 2hewF: UUUUUUUUUUu--------------------------------------------------------------------------------------------------------------------------------uuuuuuuuuuuuu
residue 2heyF U = 10 S = 0
2heyG U = 10 S = 0
2hewF U = 10 S = 0
cluster(Id≥75%) average U = 10.0 S = 0.0
* 116: LSPSSSPAKaqrthlsleekiklmrlvvrhkhelvdrktsefyakiarigyedeglaihtesacrnqiisimrvyeqrlahrqpgmkttpeedeldqlcdewkarlselqqyrekf
* 1 6extA: UUUUUUUUUuu---------------------------------------------------------------------------------------------------------
residue U = 9 S = 0
* 116: LSPSSSPAKaqrthlsleekiklmrlvvrhkhelvdrktsefyakiarigyedeglaihtesacrnqiisimrvyeqrlahrqpgmkttpeedeldqlcdewkarlselqqyrekf
* 1 6exuA: UUUUUUUUUuuu--------------------------------------------------------------------------------------------------------
residue U = 9 S = 0
* 137: MEAPKMELKSYKRKNASLSPSSSPAKaqrthlsleekiklmrlvvrhkhelvdrktsefyakiarigyedeglaihtesacrnqiisimrvyeqrlahrqpgmkttpeedeldqlcdewkarlselqqyrekflvpr
* 1 5jdkA: UUUUUUUUUUUUUUUUUUUUUUUUUUuuuuu--------------------------------------------------------------------------------------------------------uu
residue U = 26 S = 0
cluster(Id≥75%) average U = 14.7 S = 0.0
Summ
U = 10.0 + 5.0 + 17.1 + 10.0 + 14.7 = 53.8
S = 0 + 0 + 2.4 + 0 + 0 = 2.4