Mirrors of Protein Data Banks
- PDB (The base of protein structures. Syncronization with WorldWide Protein Data Bank)
- HSSP
- FSSP
- DSSP (DSSP, program [Kabsch and Sander (1983)Biopolymers, 22, 2577–2637] for localization of secondary structure elements and energy of hydrogen connections in main chain)
- SCOP (Structure Classification of Proteins)
Our Resources
- PDB (PDB в обработке М.Лобанова - ручное обновление, исправление ошибок)
- IsUnstruct предсказание неструктурированных участков белковой цепи по аминокислотной последовательности
- OGU предсказание неструктурированных участков белковой цепи по аминокислотной последовательности
- Compact база данных по кинетике сворачивания белковых структур
Nucleic Acids Res. 2009 Jan; 37(Database issue):D342-6 - KineticDB база данных по кинетике сворачивания белковых структур
Nucleic Acids Res. 2009 Jan; 37(Database issue):D342-6 - Fold Amyloid Base база данных амилоидогенных фрагментов, известных из экспериментальных данных
- Fold Amyloid сервер для предсказания амилоидогенных участков по аминокислотной последовательности
- ComSin base of protein structures in bound (Complex) and unbound (Single) states in relation to their intrinsic disorder.
Nucleic Acids Res. 2010 Jan;38(Database issue): D283-7. http://www.pathguide.org/fullrecord.php?DBID=321 - OG3 предсказание границ доменов по аминокислотной последовательности
- BM_OG предсказание границ доменов по аминокислотной последовательности
- B_factor предсказание защищенности аминокислотных остатков от водородно-дейтериевого обмена
- Thermo- and mesophilic Database of structural pairs of proteins from thermo- and mesophilic organisms
- Phi-values Experimentally measured and theoretically predicted phi-values.
Pereyaslavets LB, Sokolovsky IV, Galzitskaya OV. FoldNucleus: web server for the prediction of RNA and protein folding nuclei from their 3D structures. Bioinformatics. 2015 Oct 15;31(20):3374-6. doi: 10.1093/bioinformatics/btv369. - Ideal-base Database of 3D structures of "ideally" folded proteins.
Garbuzynskiy S.O., Lobanov M.Yu., Galzitskaya O.V. (2004). To be folded or to be unfolded? Protein Science, v.13 (11), pp. 2871-2877. - scop_1.61 Database of 3D structures with identity below 80%.
Galzitskaya O.V., Garbuzynskiy S.O., Lobanov M.Yu. (2006). Prediction of natively unfolded regions in protein chains. Molecular Biology, v.40 (2), pp. 298-304. - Natively unfolded Database of natively unfolded proteins.
Galzitskaya O.V., Garbuzynskiy S.O., Lobanov M.Yu. (2006). Prediction of natively unfolded regions in protein chains. Molecular Biology, v.40 (2), pp. 298-304. - Folded 559 Database of 559 globular proteins.
Galzitskaya O.V., Garbuzynskiy S.O., Lobanov M.Yu. (2006). Prediction of natively unfolded regions in protein chains. Molecular Biology, v.40 (2), pp. 298-304. - Folded 80 Database of 80 globular proteins.
Galzitskaya O.V., Garbuzynskiy S.O., Lobanov M.Yu. (2006). Prediction of natively unfolded regions in protein chains. Molecular Biology, v.40 (2), pp. 298-304. - HRAP Database HRAP.
Nucleic Acids Res. 2014 Jan;42(Database issue):D273-8. doi: 10.1093/nar/gkt927. Lobanov MY, Sokolovskiy IV, Galzitskaya OV. HRaP: database of occurrence of HomoRepeats and patterns in proteomes. - HRADIS Database HRADIS.
Lobanov MY, Klus P, Sokolovsky IV, Tartaglia GG, Galzitskaya OV. Non-random distribution of homo-repeats: links with biological functions and human diseases, Sci Rep. 2016 Jun 3;6:26941. doi: 10.1038/srep26941. - foldnucleus Server foldnucleus.
Pereyaslavets LB, Sokolovsky IV, Galzitskaya OV. Bioinformatics. 2015 Oct 15;31(20):3374-6. doi: 10.1093/bioinformatics/btv369. FoldNucleus: web server for the prediction of RNA and protein folding nuclei from their 3D structures. - foldhandedness Server foldhandedness.
Pereyaslavets LB, Glyakina AV, Dovidchenko NV, Sokolovskiy IV, Galzitskaya OV. What handedness and angles between helices has the studied three-helical protein domain? Bioinformatics. 2015 Mar 15;31(6):963-5. doi: 10.1093/bioinformatics/btu737. - Clustered PDB Server Clustered PDB. Michail Yu. Lobanov, Ilya V. Likhachev, Oxana Galzitskaya. Disordered Residues and Patterns in the Protein Data Bank. Molecules. 2020 Apr; 25(7): 1522. doi: 10.3390/molecules
- C.A.R.P. Contacts of Aromatic Residues in Proteins Mikhail Yu.LobanovaLeonid B.PereyaslavetsaIlya V.LikhachevabBakhyt T.MatkarimovcOxana V.Galzitskaya https://doi.org/10.1016/j.csbj.2021.10.036